PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G048403_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 1134aa    MW: 122524 Da    PI: 8.0094
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G048403_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.9e-097447751447
                        HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        d+++++G + Wk+I +++g ++t  q++s+ qky
  GRMZM2G048403_P01 744 DVIQKFGRD-WKKIEEHVG-TKTTVQIRSHAQKY 775
                        7899***77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.38.101.9E-6145177No hitNo description
PfamPF005016.4E-9147184IPR000873AMP-dependent synthetase/ligase
SuperFamilySSF568011.2E-26151246No hitNo description
Gene3DG3DSA:3.30.300.305.1E-14181246No hitNo description
SuperFamilySSF509783.11E-17550680IPR017986WD40-repeat-containing domain
SMARTSM0032014552589IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.108.1E-16552680IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM0032046596637IPR001680WD40 repeat
SMARTSM003200.0044640679IPR001680WD40 repeat
PROSITE profilePS512949.403723780IPR017930Myb domain
CDDcd001672.66E-4735776No hitNo description
PfamPF002494.6E-7744775IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.6E-9744778IPR006447Myb domain, plants
SuperFamilySSF466891.26E-7745781IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1134 aa     Download sequence    Send to blast
MNLTIRHMAQ INIFIRFFYL HPQSRPHGFD RQMPFASWWF LLLSGHLEAT MLQKLQLRRE  60
AYQFYHQEPI SQGSGVLLDL LAFLFFGLLK QPHQNSLILH AFTDLVCSYV RVNLLLSSKV  120
NRQGNISRMA DMYLTGRSLH AKNNNVRATE FTIKQGWLHT GDIGYFDEGG QLFVVDRLKE  180
LIKYKGFQIA PAELEGLLLS HLEIMDAVVI PLPNAKAGEV PIAYIVRSPD SSLTEVDVQK  240
FIEKQVTTTS PTGTHKLANP KGFSLHFSGS DIGGGYELYV DEAKPRGDDQ RGGGRSGGRS  300
GGRFGDRSGG RRGGGRFGER SGAGMVAADS MADAVEVELD GDVYITGNGS LVLLSGASLT  360
CEKYGCVISA NFLGEVRLSR GVRVTAGRVS LVATNITVAD TVVVNTSALA GDPPDQTSGV  420
PTGTHGNGGE HGGRGASCFV KQGQTQEDSW GGDAYAWSDL EHPWSYGSKG GSTRVEKDYG  480
GAGGGIVWLF AEDLVMNGIV LANGGDSNEK GGGGSGGSIF IRAASIDLRC GNASLVNQAE  540
FGKQLPIGED QQYKLVATWS RHEEKVNMLY LFGEYVLSAD AKGNVFMWAF RGAEPNIEPV  600
GSISLGDKFT PTCIMHPDTY LNKVIVGSEE GFLQLWNIST KKKLYDFNGW NSPVRCCVSS  660
PVLDVVAVGC SDGSVHVHNM IAKVAVVFHD VNVAHSSHQY VATGMPTKAA LKISVETPVD  720
CATVVVQGVL NADAESEKLW KKKDVIQKFG RDWKKIEEHV GTKTTVQIRS HAQKYFLKVQ  780
KLGLAAGLPP MYPRHHFAMQ QQQQSSVAGG SSAAAMPLLH GRQPTCASVA MPGLAEPDAV  840
AHHGSIGWSS PSVVVPAASS AASGSQFIGA PSLCDTSIDW AGGGGGSGSP KDVSFAQVYR  900
FVGDMFDADA PVPVEAHLQK LKEMDNITTK TVLLVLRNLE NNLSAPQFEP VMELTRLSDT  960
SKLDRLSTPD AFNMCRIARP EPGCLMLGGT VSKRCSGPGP VGKAIKLNEE KTEALQLEKA  1020
CVVASLIQVI NTQKASGVRR RLYYGPVPIM GRTNLDAGTD LVAKTQKYPL SNFKDDMLHF  1080
RKKLAAILLF SDINKRKGCP LYKYDKEVDA GSSSDVQILD SPTNPKKMKL LCVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bsw_B6e-271212463825034-coumarate--CoA ligase 2
5bsw_A6e-271212463825034-coumarate--CoA ligase 2
5bsv_A7e-271212463835044-coumarate--CoA ligase 2
5bsu_A7e-271212463835044-coumarate--CoA ligase 2
5bst_A7e-271212463835044-coumarate--CoA ligase 2
5bsr_A7e-271212463835044-coumarate--CoA ligase 2
5bsm_B7e-271212463835044-coumarate--CoA ligase 2
5bsm_A7e-271212463835044-coumarate--CoA ligase 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314GGRRGGG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G048403
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G048403_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1651730.0AC165173.2 Zea mays clone ZMMBBb-125O19, complete sequence.
GenBankBT0344800.0BT034480.1 Zea mays full-length cDNA clone ZM_BFc0173J01 mRNA, complete cds.
GenBankEU9653660.0EU965366.1 Zea mays clone 285584 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A096QL040.0A0A096QL04_MAIZE; Uncharacterized protein
STRINGGRMZM2G048403_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.12e-18MYB_related family protein